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1

[ACM Press the 22nd ACM SIGKDD International Conference - San Francisco, California, USA (2016.08.13-2016.08.17)] Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD '16 - Generalized Hierarchical Sparse Model for Arbitrary-Order Interactive Antigenic Sites Identification in Flu Virus Data

Han, Lei, Zhang, Yu, Wan, Xiu-Feng, Zhang, Tong

Année:

2016

Langue:

english

Fichier:

PDF, 2.31 MB

english, 2016

2

Reduced Influenza B-specific Post-Vaccination Antibody Cross-reactivity in the B/Victoria Lineage Predominant 2019/20 Season

Xie, Hang, Xiang, Ruoxuan, Wan, Hamilton J, Plant, Ewan P, Radvak, Peter, Kosikova, Martina, Li, Xing, Zoueva, Olga, Ye, Zhiping, Wan, Xiu-Feng

Journal:

Clinical Infectious Diseases

Année:

2020

Fichier:

PDF, 1.18 MB

2020

3

Development and assessment of scoring functions for protein identification using PMF data

Zhao Song, Luonan Chen, Ashwin Ganapathy, Xiu-Feng Wan, Laurent Brechenmacher, Nengbing Tao, David Emerich, Gary Stacey, Dong Xu

Journal:

ELECTROPHORESIS

Année:

2007

Langue:

english

Fichier:

PDF, 356 KB

english, 2007

4

Avian-origin H3N2 canine influenza A viruses in Southern China

Shoujun Li, Zhihai Shi, Peirong Jiao, Guihong Zhang, Zhiwen Zhong, Wenru Tian, Li-Ping Long, Zhipeng Cai, Xingquan Zhu, Ming Liao, Xiu-Feng Wan

Journal:

Infection, Genetics and Evolution

Année:

2010

Langue:

english

Fichier:

PDF, 287 KB

english, 2010

5

Identification of an H6N6 swine influenza virus in southern China

Guihong Zhang, Weili Kong, Wenbao Qi, Li-Ping Long, Zongxi Cao, Liangzong Huang, Haitao Qi, Nan Cao, Wenhua Wang, Furong Zhao, Zhangyong Ning, Ming Liao, Xiu-Feng Wan

Journal:

Infection, Genetics and Evolution

Année:

2011

Langue:

english

Fichier:

PDF, 893 KB

english, 2011

6

SO2426 is a positive regulator of siderophore expression inShewanella oneidensisMR-1

Kristene L Henne, Xiu-Feng Wan, Wei Wei, Dorothea K Thompson

Journal:

BMC Microbiology

Année:

2011

Langue:

english

Fichier:

PDF, 1.43 MB

english, 2011

7

Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model

Xiu-Feng Wan, Susan M. Bridges, John A. Boyle

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 1.90 MB

english, 2004

8

Intrinsic Terminator Prediction and Its Application inSynechococcus sp.WH8102

Xiu-Feng Wan, Dong Xu

Journal:

Journal of Computer Science and Technology

Année:

2005

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2005

9

Ascovirus and its evolution

Xiao-Wen Cheng, Xiu-Feng Wan, Jianli Xue, Richard C. Moore

Journal:

Virologica Sinica

Année:

2007

Langue:

english

Fichier:

PDF, 194 KB

english, 2007

10

MORE ALCOHOL DEPENDENCE THAN ABUSE IN RURAL CHINA

WAN-JUN GUO, XIU-FENG XU, SING LEE

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 89 KB

english, 2009

11

Highly Pathogenic H5N1 Avian Influenza Viruses Exhibit Few Barriers to Gene Flow in Vietnam

Margaret Carrel, Xiu-Feng Wan, Tung Nguyen, Michael Emch

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 463 KB

english, 2012

12

Proteomics inference of genes involved in host adaptation of Mycoplasma gallinarum

Xiu-Feng Wan, Scott L. Branton, Stephanie D. Collier, Jeff D. Evans, Spencer A. Leigh, G. Todd Pharr

Journal:

Veterinary Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 172 KB

english, 2010

13

Characterization of a highly pathogenic avian influenza H5N1 virus sublineage in poultry seized at ports of entry into Vietnam

Tung Nguyen, C. Todd Davis, William Stembridge, Bo Shu, Amanda Balish, Kenjiro Inui, Hoa T. Do, Huong T. Ngo, Xiu-Feng Wan, Margaret McCarron, Stephen E. Lindstrom, Nancy J. Cox, Cam V. Nguyen, Alexan

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 469 KB

english, 2009

14

Core and periphery structures in protein interaction networks

Feng Luo, Bo Li, Xiu-Feng Wan, Richard H Scheuermann

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 625 KB

english, 2009

15

Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping

Guohui Lin, Zhipeng Cai, Junfeng Wu, Xiu-Feng Wan, Lizhe Xu, Randy Goebel

Journal:

BMC Bioinformatics

Année:

2008

Langue:

english

Fichier:

PDF, 299 KB

english, 2008

16

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

Xiu-Feng Wan, Dong Xu, Andris Kleinhofs, Jizhong Zhou

Journal:

BMC Evolutionary Biology

Année:

2004

Langue:

english

Fichier:

PDF, 2.26 MB

english, 2004

17

Transcriptome analysis reveals response regulator SO2426-mediated gene expression inShewanella oneidensisMR-1 under chromate challenge

Karuna Chourey, Wei Wei, Xiu-Feng Wan, Dorothea K Thompson

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 584 KB

english, 2008

18

Identifying Antigenicity-Associated Sites in Highly Pathogenic H5N1 Influenza Virus Hemagglutinin by Using Sparse Learning

Zhipeng Cai, Mariette F. Ducatez, Jialiang Yang, Tong Zhang, Li-Ping Long, Adrianus C. Boon, Richard J. Webby, Xiu-Feng Wan

Journal:

Journal of Molecular Biology

Année:

2012

Langue:

english

Fichier:

PDF, 1007 KB

english, 2012

19

Antigenic distance measurements for seasonal influenza vaccine selection

Zhipeng Cai, Tong Zhang, Xiu-Feng Wan

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 351 KB

english, 2012

20

Antigenic characterization of recent H5N1 highly pathogenic avian influenza viruses circulating in Egyptian poultry

Beato, Maria Serena, Mancin, Marzia, Yang, Jialiang, Buratin, Alessandra, Ruffa, Marco, Maniero, Silvia, Fusaro, Alice, Terregino, Calogero, Wan, Xiu-Feng, Capua, Ilaria

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 980 KB

english, 2013

21

New apotirucallane-type triterpenoids fromChisocheton paniculatus

Feng Zhang, Xiu-Feng He, Wen-Bin Wu, Wan-Sheng Chen, Jian-Min Yue

Journal:

Natural Products and Bioprospecting

Année:

2012

Langue:

english

Fichier:

PDF, 585 KB

english, 2012

22

Population-environment drivers of H5N1 avian influenza molecular change in Vietnam

Margaret A. Carrel, Michael Emch, Tung Nguyen, R. Todd Jobe, Xiu-Feng Wan

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 889 KB

english, 2012

23

Detection of African swine fever virus-like sequences in ponds in the Mississippi Delta through metagenomic sequencing

Xiu-Feng Wan, J. Lamar Barnett, Fred Cunningham, Si Chen, Guohua Yang…

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 655 KB

english, 2013

24

BinAligner: a heuristic method to align biological networks

Yang, Jialiang, Li, Jun, Grünewald, Stefan, Wan, Xiu-Feng

Journal:

BMC Bioinformatics

Année:

2013

Langue:

english

Fichier:

PDF, 417 KB

english, 2013

25

Development and validation of an attenuated Mycoplasma hyopneumoniae aerosol vaccine

Feng, Zhi-Xin, Wei, Yan-Na, Li, Gui-Lan, Lu, Xiao-Ming, Wan, Xiu-Feng, Pharr, G. Todd, Wang, Zhan-Wei, Kong, Meng, Gan, Yuan, Bai, Fang-Fang, Liu, Mao-Jun, Xiong, Qi-Yan, Wu, Xu-Su, Shao, Guo-Qing

Journal:

Veterinary Microbiology

Année:

2013

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2013

26

Mutation from arginine to lysine at the position 189 of hemagglutinin contributes to the antigenic drift in H3N2 swine influenza viruses

Ye, Jianqiang, Xu, Yifei, Harris, Jillian, Sun, Hailiang, Bowman, Andrew S., Cunningham, Fred, Cardona, Carol, Yoon, Kyoungjin J., Slemons, Richard D., Wan, Xiu-Feng

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 281 KB

english, 2013

27

Perspective on emergence and re-emergence of amantadine resistant influenza A viruses in domestic animals in China

Wan, Xiu-Feng, Carrel, Margaret, Long, Li-Ping, Alker, Alisa P., Emch, Mike

Journal:

Infection, Genetics and Evolution

Année:

2013

Langue:

english

Fichier:

PDF, 2.60 MB

english, 2013

28

Supplement: Sixth International Symposium on Avian Influenza || Computational Identification of Reassortments in Avian Influenza Viruses (Identificación computacional de recombinaciones en virus de influenza aviar)

Xiu-Feng Wan, Xiaomeng Wu, Guohui Lin, Samuel B. Holton, Racheal A. Desmone, Chi-Ren Shyu, Yi Guan and Michael E. Emch

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 1.05 MB

english, 2007

29

Quartet-based methods to reconstruct phylogenetic networks

Yang, Jialiang, Grünewald, Stefan, Xu, Yifei, Wan, Xiu-Feng

Journal:

BMC Systems Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.02 MB

english, 2014

30

Limonoids and Diterpenoids from Toona ciliata Roem. var. yunnanensis

Zhang, Feng, Liao, Shang-Gao, Zhang, Chuan-Rui, He, Xiu-Feng, Chen, Wan-Sheng, Yue, Jian-Min

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 176 KB

english, 2011

31

Use of serological and mucosal immune responses to Mycoplasma hyopneumoniae antigens P97R1, P46 and P36 in the diagnosis of infection

Feng, Zhi-Xin, Bai, Yun, Yao, Jing-Ting, Pharr, G. Todd, Wan, Xiu-Feng, Xiao, Shao-Bo, Chi, Ling-Zhi, Gan, Yuan, Wang, Hai-Yan, Wei, Yan-Na, Liu, Mao-Jun, Xiong, Qi-Yan, Bai, Fang-Fang, Li, Bin, Wu, X

Journal:

The Veterinary Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2014

32

Enhancing nitrogen utilization and soil nitrogen balance in paddy fields by optimizing nitrogen management and using polyaspartic acid urea

Deng, Fei, Wang, Li, Ren, Wan-Jun, Mei, Xiu-Feng

Journal:

Field Crops Research

Année:

2014

Langue:

english

Fichier:

PDF, 597 KB

english, 2014

33

Optimized nitrogen managements and polyaspartic acid urea improved dry matter production and yield of indica hybrid rice

Deng, Fei, Wang, Li, Ren, Wan-Jun, Mei, Xiu-Feng, Li, Shu-Xian

Journal:

Soil and Tillage Research

Année:

2015

Langue:

english

Fichier:

PDF, 494 KB

english, 2015

34

Genetic Variation of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam Shows Both Species-Specific and Spatiotemporal Associations

Carrel, Margaret, Wan, Xiu-Feng, Nguyen, Tung, Emch, Michael

Journal:

Avian Diseases Digest

Année:

2011

Langue:

english

Fichier:

PDF, 119 KB

english, 2011

35

Computational Identification of Reassortments in Avian Influenza Viruses

Wan, Xiu-Feng, Wu, Xiaomeng, Lin, Guohui, Holton, Samuel B., Desmone, Racheal A., Shyu, Chi-Ren, Guan, Yi, Emch, Michael E.

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 290 KB

english, 2007

36

[IEEE 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05) - Stanford, CA, USA (08-11 Aug. 2005)] 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05) - Whole Genome Phylogeny Based on Clustered Signature String Composition

Xiaomeng Wu,, Guohui Lin,, Xiu-Feng Wan,, Dong Xu,

Année:

2005

Langue:

english

Fichier:

PDF, 114 KB

english, 2005

37

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomedicine - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomedicine - Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights

Grindinger, Thomas, Luo, Feng, Wan, Xiu-Feng, Scheuermann, Richard H.

Année:

2008

Langue:

english

Fichier:

PDF, 308 KB

english, 2008

38

Genetic Variation of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam Shows Both Species-Specific and Spatiotemporal Associations

Carrel, Margaret, Wan, Xiu-Feng, Nguyen, Tung, Emch, Michael

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.04 MB

english, 2011

39

Potency, Efficacy, and Antigenic Mapping of H7 Avian Influenza Virus Vaccines Against the 2012 H7N3 Highly Pathogenic Avian Influenza Virus from Mexico

Spackman, Erica, Wan, Xiu-Feng, Kapczynski, Darrell, Xu, Yifei, Pantin-Jackwood, Mary, Suarez, David L., Swayne, David

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 198 KB

english, 2014

40

Detection of influenza antigenic variants directly from clinical samples using polyclonal antibody based proximity ligation assays

Martin, Brigitte E., Jia, Kun, Sun, Hailiang, Ye, Jianqiang, Hall, Crystal, Ware, Daphne, Wan, Xiu-Feng

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2015

41

RNALL: AN EFFICIENT ALGORITHM FOR PREDICTING RNA LOCAL SECONDARY STRUCTURAL LANDSCAPE IN GENOMES

WAN, XIU-FENG, LIN, GUOHUI, XU, DONG

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2006

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2006

42

UBIQUITOUS REASSORTMENTS IN INFLUENZA A VIRUSES

WAN, XIU-FENG, OZDEN, MUFIT, LIN, GUOHUI

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2008

Langue:

english

Fichier:

PDF, 928 KB

english, 2008

43

Error-prone pcr-based mutagenesis strategy for rapidly generating high-yield influenza vaccine candidates

Ye, Jianqiang, Wen, Feng, Xu, Yifei, Zhao, Nan, Long, Liping, Sun, Hailiang, Yang, Jialiang, Cooley, Jim, Todd Pharr, G., Webby, Richard, Wan, Xiu-Feng

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 5.90 MB

english, 2015

44

Variation in protection of four divergent avian influenza virus vaccine seed strains against eight clade 2.2.1 and 2.2.1.1. Egyptian H5N1 high pathogenicity variants in poultry

Spackman, Erica, Swayne, David E., Pantin-Jackwood, Mary J., Wan, Xiu-Feng, Torchetti, Mia K., Hassan, Mohammad, Suarez, David L., Sá e Silva, Mariana

Journal:

Influenza and Other Respiratory Viruses

Année:

2014

Langue:

english

Fichier:

PDF, 436 KB

english, 2014

45

Computational Methods for Remote Homolog Identification

Wan, Xiu-Feng, Xu, Dong

Journal:

Current Protein & Peptide Science

Année:

2005

Langue:

english

Fichier:

PDF, 205 KB

english, 2005

46

A Computational Framework for Influenza Antigenic Cartography

Cai, Zhipeng, Zhang, Tong, Wan, Xiu-Feng, Fraser, Christophe

Journal:

PLoS Computational Biology

Année:

2010

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2010

47

Computational Identification of Reassortments in Avian Influenza Viruses

Wan, Xiu-Feng, Wu, Xiaomeng, Lin, Guohui, Holton, Samuel B., Desmone, Racheal A., Shyu, Chi-Ren, Guan, Yi, Emch, Michael E.

Journal:

Avian Diseases Digest

Année:

2007

Langue:

english

Fichier:

PDF, 124 KB

english, 2007

48

Influenza D virus infection in Mississippi beef cattle

Ferguson, Lucas, Eckard, Laura, Epperson, William B., Long, Li-Ping, Smith, David, Huston, Carla, Genova, Suzanne, Webby, Richard, Wan, Xiu-Feng

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 671 KB

english, 2015

49

Series on Advances in Bioinformatics and Computational Biololgy [Imperial College Press Computational Systems Bioinformatics - the Conference CSB 2006 - Stanford CA (2006.08.14-2006.08.18)] Computational Systems Bioinformatics - Proceedings of the Conference CSB 2006 - WHOLE GENOME COMPOSITION DISTANCE FOR HIV-1 GENOTYPING

Wu, Xiaomeng, Goebel, Randy, Wan, Xiu-Feng, Lin, Guohui

Année:

2006

Langue:

english

Fichier:

PDF, 494 KB

english, 2006

50

Genetic Variation of Highly Pathogenic H5N1 Avian Influenza Viruses in Vietnam Shows Both Species-Specific and Spatiotemporal Associations

Margaret Carrel, Xiu-Feng Wan, Tung Nguyen and Michael Emch

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 2.08 MB

english, 2011